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Abstract Vigorous hydrothermal circulation in the basement aquifer of the oceanic crust homogenizes temperatures within the aquifer and generates fluid overpressures at the tops of buried basement highs. At a site ∼25 km seaward of the Cascadia subduction zone deformation front, fluid overpressure at the top of the buried MARGIN seamount drives vertical fluid seepage through sediment overlying the seamount and results in anomalously high heat flux at the seafloor. In this study, we use numerical models of coupled heat and fluid transport to investigate the sensitivity of fluid overpressures to sediment thickness and basement relief for a 2D buried basement ridge. For ∼8 Ma oceanic crust buried by low permeability sediment, we find that the overpressure at the summit of a basement ridge increases by ∼0.10 kPa per meter of burial depth and by ∼0.71 kPa per meter of basement relief. For a 3D system with a geometry similar to the MARGIN seamount buried by low permeability sediment, the modeled fluid overpressure at the top of the seamount is ∼996 kPa. However, the Astoria Fan sediment above the MARGIN seamount likely has relatively high permeability, permitting rapid vertical seepage, thereby reducing fluid overpressure maintained at the top of the seamount. An overpressure of 492 kPa at the summit of the buried seamount at the MARGIN site and a bulk permeability of the Astoria Fan sediments of 4 × 10⁻¹⁵ m²are consistent with the seepage rate of 5.4 cm yr⁻¹estimated from the elevated heat flux. 

Abstract Sediment thermal history controls the progress of diagenetic reactions that can alter the mechanical behavior of material entering a subduction zone that then: accretes to the margin, hosts the plate boundary interface, or is carried deeper within the Earth. On the Cascadia margin offshore Oregon (USA), hydrothermal circulation in the oceanic crust affects thermally controlled processes, enhancing sediment alteration above the MARGIN seamount, which is buried by the Astoria Fan. Hydrothermal circulation increases temperatures at the summit of the seamount and in the overlying sediment by up to ∼100°C. We use sediment thermal history constrained by heat flux observations to model the expected progress of the smectite‐to‐illite reaction around the MARGIN seamount. Above the seamount, the smectite‐to‐illite reaction is expected to progress to completion ∼250 m below the seafloor; away from the seamount, smectite is likely unaltered to a burial depth of ∼800 m. The altered sediment above the seamount has higher rigidity and p‐wave velocity than the surrounding sediment. Spatial variability in sediment alteration may be present around other buried seamounts. We use vertical gravity gradient anomalies to estimate the locations and heights of additional seamounts. Each of these seamounts may have altered sediment around it, which could affect deformation and seismicity in the margin wedge. Because cemented sediment with greater elastic strength is better able to store elastic strain energy, enhanced sediment alteration and cementation above seamounts entering the subduction zone could facilitate earthquake nucleation for material in the margin wedge that was above a seamount prior to subduction. 

The MARGIN site is at a buried basement high (likely a buried seamount) offshore Oregon, ~25 km seaward of the Cascadia subduction zone deformation front. The buried basement high rises ~1300 m above the surrounding basaltic basement. The MARGIN basement high was first identified on the north-south-trending MARGIN transect, collected as part of the Juan de Fuca Ridge-to-Trench project; that seismic transect crossed the flank of the MARGIN basement high. Subsequently, the east-west-trending Line PD11 collected as part of the MGL2104 CASIE21 project conducted in 2021 crossed a higher and more substantial portion of the MARGIN basement high. In 2022, in-situ measurements of thermal gradient were collected crossing and around the MARGIN basement high using a 3.5-m violin-style heat flow probe. This multi-penetration heat flow probe was loaned from the U.S. Marine Heat Flow Capability. The thermistor string houses 11 thermistors. The in-situ thermal gradient is combined with an assumed thermal conductivity versus depth trend to determine the heat flow. The data was processed using SlugHeat (https://marine-heatflow.ceoas.oregonstate.edu/software/). The data file is in ASCII tab-separated format, with column headers. Funding was provided by National Science Foundation awards OCE19-24331, OCE20-34872, and OCE20-34896. 

Abstract Precision radial velocity spectrographs that use adaptive optics (AO) show promise to advance telescope observing capabilities beyond those of seeing-limited designs. We are building a spectrograph for the Large Binocular Telescope (LBT) named iLocater that uses AO to inject starlight directly into single mode fibers. iLocater's first acquisition camera system (the SX camera), which receives light from one of the 8.4 m diameter primary mirrors of the LBT, was initially installed in summer 2019 and has since been used for several commissioning runs. We present results from first-light observations that include on-sky measurements as part of commissioning activities. Imaging measurements of the bright B3IV star 2 Cygni (V= 4.98) resulted in the direct detection of a candidate companion star at an angular separation of onlyθ = 70 mas. Follow-up AO measurements using Keck/NIRC2 recover the candidate companion in multiple filters. AnR ≈ 1500 miniature spectrograph recently installed at the LBT named Lili provides spatially resolved spectra of each binary component, indicating similar spectral types and strengthening the case for companionship. Studying the multiplicity of young runaway star systems like 2 Cygni (36.6 ± 0.5 Myr) can help to understand formation mechanisms for stars that exhibit anomalous velocities through the Galaxy. This on-sky demonstration illustrates the spatial resolution of the iLocater SX acquisition camera working in tandem with the LBT AO system; it further derisks a number of technical hurdles involved in combining AO with Doppler spectroscopy. 

Abstract The blue whale, Balaenoptera musculus, is the largest animal known to have ever existed, making it an important case study in longevity and resistance to cancer. To further this and other blue whale-related research, we report a reference-quality, long-read-based genome assembly of this fascinating species. We assembled the genome from PacBio long reads and utilized Illumina/10×, optical maps, and Hi-C data for scaffolding, polishing, and manual curation. We also provided long read RNA-seq data to facilitate the annotation of the assembly by NCBI and Ensembl. Additionally, we annotated both haplotypes using TOGA and measured the genome size by flow cytometry. We then compared the blue whale genome with other cetaceans and artiodactyls, including vaquita (Phocoena sinus), the world's smallest cetacean, to investigate blue whale's unique biological traits. We found a dramatic amplification of several genes in the blue whale genome resulting from a recent burst in segmental duplications, though the possible connection between this amplification and giant body size requires further study. We also discovered sites in the insulin-like growth factor-1 gene correlated with body size in cetaceans. Finally, using our assembly to examine the heterozygosity and historical demography of Pacific and Atlantic blue whale populations, we found that the genomes of both populations are highly heterozygous and that their genetic isolation dates to the last interglacial period. Taken together, these results indicate how a high-quality, annotated blue whale genome will serve as an important resource for biology, evolution, and conservation research. 

Abstract The Javan gibbon, Hylobates moloch, is an endangered gibbon species restricted to the forest remnants of western and central Java, Indonesia, and one of the rarest of the Hylobatidae family. Hylobatids consist of 4 genera (Holoock, Hylobates, Symphalangus, and Nomascus) that are characterized by different numbers of chromosomes, ranging from 38 to 52. The underlying cause of this karyotype plasticity is not entirely understood, at least in part, due to the limited availability of genomic data. Here we present the first scaffold-level assembly for H. moloch using a combination of whole-genome Illumina short reads, 10X Chromium linked reads, PacBio, and Oxford Nanopore long reads and proximity-ligation data. This Hylobates genome represents a valuable new resource for comparative genomics studies in primates. 

Apes possess two sex chromosomes—the male-specific Y chromosome and the X chromosome, which is present in both males and females. The Y chromosome is crucial for male reproduction, with deletions being linked to infertility¹. The X chromosome is vital for reproduction and cognition². Variation in mating patterns and brain function among apes suggests corresponding differences in their sex chromosomes. However, owing to their repetitive nature and incomplete reference assemblies, ape sex chromosomes have been challenging to study. Here, using the methodology developed for the telomere-to-telomere (T2T) human genome, we produced gapless assemblies of the X and Y chromosomes for five great apes (bonobo (Pan paniscus), chimpanzee (Pan troglodytes), western lowland gorilla (Gorilla gorilla gorilla), Bornean orangutan (Pongo pygmaeus) and Sumatran orangutan (Pongo abelii)) and a lesser ape (the siamang gibbon (Symphalangus syndactylus)), and untangled the intricacies of their evolution. Compared with the X chromosomes, the ape Y chromosomes vary greatly in size and have low alignability and high levels of structural rearrangements—owing to the accumulation of lineage-specific ampliconic regions, palindromes, transposable elements and satellites. Many Y chromosome genes expand in multi-copy families and some evolve under purifying selection. Thus, the Y chromosome exhibits dynamic evolution, whereas the X chromosome is more stable. Mapping short-read sequencing data to these assemblies revealed diversity and selection patterns on sex chromosomes of more than 100 individual great apes. These reference assemblies are expected to inform human evolution and conservation genetics of non-human apes, all of which are endangered species.